CHEM-T 580 Physical Biochemistry (Graduate) - Law
CHEM-T 580 Physical Biochemistry (Graduate) - Law
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Absorption Spectrum of Organic Compounds
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Taken from Lee, P. Y. et al, Agarose Gel Electrophoresis for the Separation of DNA Fragments, J. Vis. Exp. 2012, 62, 3923.
Agarose Gel Electrophoresis for the Separation of…
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Allosteric Interactions: Phenomological…
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For use in CHEM-C 106 and CHEM-T 580
An Introduction to Entropy - A Conceptual Take
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An Introduction to Molecular Orbital Theory
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Analyzing a MD Simulation Using Chimera
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Analyzing Ligand Binding Using Linear Plots
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Applications of Computational Methods
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Biological Water and the Hydrophobic Effect
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Collecting Variable-concentration Isothermal… 10 of 83
Collecting Variable-concentration Isothermal…
Freiburger, L. A., Mittermaier, A. K., Auclair, K. Collecting Variable-concentration Isothermal Titration Calorimetry Datasets in Order to Determine Binding Mechanisms.…Collecting Variable-concentration Isothermal…
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Describing the Conformations of Nucleic Acids 13 of 83
Describing the Conformations of Nucleic Acids
Describing the Conformations of Nucleic Acids
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Determining Biomolecular Structure Using NMR
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Diffraction Pattern to Electron Density Map
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This video is from a simulation reported in Zhu, Singer, Zheng, Conlisk, Phys. Rev. E71(4): 041501 (2005). Supplied by Dr. Sherwin Singer, The Ohio State University.
Electroosmotic Flow
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Fillebeen, C., Wilkinson, N. and Pantopoulos, K. Electrophoretic Mobility Shift Assay (EMSA) for the Study of RNA-Protein Interactions: The IRE/IRP Example. J. Vis.…
Electrophoretic Mobility Shift Assay (EMSA) for…
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This uses a hand-waving approach to explain the entropy calculation in a manner similar to Kuriyan, Konforti, and Wemmer. For T580
Energetics of Protein Unfolding
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This includes the short section on non-constant heat capacities.
Enthalpy (C481 version)
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Forces Driving Protein Folding: An Overview
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Fractional Concentration of Protein-Ligand…
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From Amino Acids to the Primary Structure - No…
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From Electron Density Map to Structure
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New video that covers this at the Gen Chem level. For CHEM-C 106 and T 580
Gibbs Free Energy
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The approach taken here is fashioned after Kuriyan, Konforti and Wemmer. It is made for CHEM-T 580
Heat, Work, and Energy
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This is a conceptual take and is designed for CHEM-T 580
Introducing Integrals
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Introduction to CHEM-T 580 Physical Biochemistry…
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Introduction to Equilibrium Constants
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This is designed to work with CHEM-T 580 - i.e. aligned with the Kuriyan text
Introduction to Noncovalent Interactions
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Introduction to Nuclear Magnetic Resonance
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Introduction to Physical Biochemistry
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Introduction to SDS-PAGE Electrophoresis
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Introduction to the Dissociation Constant in… 45 of 83
Introduction to the Dissociation Constant in…
Introduction to the Dissociation Constant in…
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This is designed for use with Kuriyan et al Ch. 1.3 for CHEM-T 580
Ionic Interactions in Biomolecules
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Measuring a Dihedral Angle Using UCSF Chimera 47 of 83
Measuring a Dihedral Angle Using UCSF Chimera
Using 1AOIMeasuring a Dihedral Angle Using UCSF Chimera
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Molecular Orbitals from 2p Atomic Orbitals
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This is largely not for organic since it includes relaxation times .
Observables in NMR Experiments
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Obtaining Thermodynamical Information from…
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Optimizing Crystallization Conditions
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Osmosis from a Statistical Mechanics Perspective
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This takes phase transitions at a more in depth level, and essentially gets it to the thermographs in Kuriyan. This is designed for CHEM-T 580
Phase Transitions
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Physical Principles of Electrophoresis
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Protein Aggregation and Misfolding (for T580) 64 of 83
Protein Aggregation and Misfolding (for T580)
This video goes a little more than the C484 video. It is designed for T580 Physical BiochemistryProtein Aggregation and Misfolding (for T580)
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This is a short video on the four levels and the forces holding them together, designed for CHEM-C 108, General Organic Biochemistry (for non-science majors).
Protein Structure - No Interactions
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Quantification of Proteins and Nucleic Acids
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Reactions at Chemical Equilibrium: A Simulation
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Setting Up and Running a Molecular Dynamics…
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The Diffraction Pattern of Crystals and the Phase…
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The Double Helix Structure of DNA - No Forces of…
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This is designed to go with Kuriyan et al, for CHEM-T 580 Physical Biochemistry
van der Waals interactions
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